PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604893.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 345aa    MW: 38167.2 Da    PI: 10.2616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31273330359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  XP_009604893.1 273 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGDHNHS 330
                     99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.8E-18221269IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-33259330IPR003657WRKY domain
PROSITE profilePS5081130.481266332IPR003657WRKY domain
SuperFamilySSF1182908.89E-27268330IPR003657WRKY domain
SMARTSM007747.7E-37271331IPR003657WRKY domain
PfamPF031067.1E-27273329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMTRGY SRSDSFSTKM EEKAVQEAAT AGLQSVEKLI RLLSQSHQNQ QQKLDQNPSI  60
SADYTAVADV AVNKFKKFIS LLDKNRTGHA RFRKGPISTP LPPKPQQQRL DQNSIKNQNL  120
HIEETEKPQT NTPKIYCPTP IQRLPPLPHN HLQLVKNGSI ERKESSTTIN FASASPANSF  180
MSSLTGETES LQQSLSSGFQ ITNLSTVSSA GRPPLSTSSF KRKCSSMDDT ALKCNSAGGS  240
SGRCHCPKKR KSRVKRVVRV PAISMKMADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV  300
RGCPARKHVE RALDDPTMLI VTYEGDHNHS HSITESPAAH VLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21259329271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415200.0AB041520.1 Nicotiana tabacum mRNA for WRKY transcription factor NtEIG-D48, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604893.10.0PREDICTED: probable WRKY transcription factor 7
RefseqXP_016499499.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-105WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A089X5B80.0A0A089X5B8_NICBE; WRKY17
STRINGSolyc04g078550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-95WRKY DNA-binding protein 7